PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca12464.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 447aa    MW: 50542.9 Da    PI: 6.3059
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca12464.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.55.7e-321252651128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tksgyW 83 
                 lp+G++F+P+d el+ e+L++k+ +++      ++  e+i++++    i++++P+dLp  v+++ ++++fF+k++++ya+g+rk+r+       ++ +W
  Dca12464.1 125 LPAGVKFDPSDVELL-EHLAAKCGRNDanshvfID--EFIPTLEmdkgICYTHPKDLP-GVSKDGNSVHFFHKTANAYASGQRKRRKiqneqnHETVRW 219
                 799************.99****9999966553322..23433322345**********.66778899*******************845555444889* PP

         NAM  84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 ++tgk+k++++ +  ++g+kk++v+y  + + +k++k++Wvmh+y+l
  Dca12464.1 220 HKTGKTKPIFD-NCVQKGCKKIMVLYrsSRKGSKPVKSNWVMHQYHL 265
                 ***********.8999**********4434677888*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-36112284IPR003441NAC domain
PROSITE profilePS5100530.129125284IPR003441NAC domain
PfamPF023652.3E-13126265IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MLQLVLIVFI LWSKVDINGG ITFVVYRENG GWRRHHSGVG TDGSRSDLRE REMGFRMVEL  60
VVLGRGEQRA RRRSWVLDCR GIAKKIRHTS LPPAVQIADS GAKVECPKCH NWIGNKDVCY  120
EWPGLPAGVK FDPSDVELLE HLAAKCGRND ANSHVFIDEF IPTLEMDKGI CYTHPKDLPG  180
VSKDGNSVHF FHKTANAYAS GQRKRRKIQN EQNHETVRWH KTGKTKPIFD NCVQKGCKKI  240
MVLYRSSRKG SKPVKSNWVM HQYHLGIEED ERDGEYVVSK IFYQQNNKQN EAVDDDIIAG  300
NESVRVVTPH CPKTPMNPTP NPRRIESFLL GDDATDDCNT GANKEDLEPA NAEFSAPGIH  360
PKEEIKPQAE ESRALDTNID DVDLRCNEIF SSCMPFDNNI FHGLNDIDVN GACDITGLEN  420
IELDSQDLQD IQFGSQDSIL SWLDKLY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686990.11e-163PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK22e-85NAC8_ARATH; NAC domain-containing protein 8
TrEMBLA0A0J8D7J51e-163A0A0J8D7J5_BETVU; Uncharacterized protein
STRINGSolyc02g093420.2.11e-115(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.13e-87NAC domain containing protein 85